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I have reversed the scroll direction in settings for xfce. The direction has reversed in gtk applications but it remains the default direction in qt applications.
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Does this help?
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The synaptics.conf file has this section in it:
# DO NOT EDIT THIS FILE, your distribution will likely overwrite
# it when updating. Copy (and rename) this file into
# /etc/X11/xorg.conf.d first.
For now, I have copied the xorg.conf.d folder from /usr/share/X11 to /etc/X11 and made the changes in the copied file. I have reversed the scrolling direction globally. Will see if any update breaks this.
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